PLANT JOURNAL

Roles of RAD51 and RTEL1 in telomere and rDNA stability in Physcomitrella patens

Goffová, I., Vágnerová, R., Peška, V., Franek, M., Havlová, K., Holá, M., Zachová, D., Fojtová, M., Cuming, A. C., Kamisugi, Y., Angelis, K., Fajkus, J.
PLANT JOURNAL 98 : 1090-1105 , 2019
Klíčová slova: Physcomitrella patens; ribosomal RNA genes; telomere; genome stability; RTEL1; RAD51; Sog One-Like

Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda

Finke, A., Mandáková, T., Nawaz, K., Vu, G.T.H., Novák, P., Macas, J., Lysak, M.A., Pečinka, A.
PLANT JOURNAL 99 : 1066-1079 , 2019
Klíčová slova: satellite repeats, heterochromatin, DNA methylation, comparative genomics, Brassicaceae

The genome of cowpea (Vigna unguiculata [L.] Walp.)

Lonardi, S., Muñoz-Amatriaín, M., Liang, Q., Shu, S., Wanamaker, S.I., Lo, S., Tanskanen, J., Schulman, A.H., Zhu, T., Luo, M.-Ch., Alhakami, H., Ounit, R., Hasan, A.M., Verdier, J., Roberts, P. A., Santos, J. R.P., Ndeve, A., Doležel, J., Vrána, J., Hokin, S. A., Farmer, A. D., Cannon, S. B., Close, T.J.
PLANT JOURNAL 98 : 767-782 , 2019
Klíčová slova: chromosomal inversion, cowpea, domestication, genome annotation, genome evolution, genome size, next-generation sequencing, legumes, Phaseolus vulgaris, repetitive elements, Vigna unguiculata

Discovery of multi-megabase polymorphic inversions by chromosome conformation capture sequencing in large-genome plant species

Himmelbach, A., Ruban, A., Walde, I., Šimková, H., Doležel, J., Hastie, A., Stein, N., Mascher, M.
PLANT JOURNAL 96 : 1309-1316 , 2018
Klíčová slova: Hordeum vulgare ; barley; chromosomal inversions; chromosome conformation capture sequencing; genomics; optical mapping; technical advance

When the BRANCHED network bears fruit: How carpic dominance causes fruit dimorphism in Aethionema

Lenser T., Tarkowská D., Novák O., Wilhelmsson P.K.I., Bennett T., Rensing S.A., Strnad M., Theißen G.
PLANT JOURNAL : , 2018
Klíčová slova: Aethionema arabicum, auxin, BRANCHED1, carpic dominance, cytokinin, fruit dimorphism, fruit development, molecular evolution, phytohormones, shoot branching

Interplay between cytochrome c and gibberellins during Arabidopsis vegetative development

Racca S., Welchen E., Gras D.E., Tarkowská D., Turečková V., Maurino V.G., Gonzalez D.H.
PLANT JOURNAL : , 2018
Klíčová slova: cytochrome c, gibberellin, DELLA protein, mitochondrion, Arabidopsis thaliana

Microscale magnetic microparticle-based immunopurification of cytokinins from Arabidopsis root apex.

Plačková L., Oklestkova J., Pospíšková K., Poláková K., Buček J., Stýskala J., Zatloukal M., Šafařík I., Zbořil R., Strnad M., Doležal K., Novák O.
PLANT JOURNAL 85 : 1065-1075 , 2017
Klíčová slova: cytokinins, magnetic microparticles, immunoaffinity separation, metabolite profiling, Arabidopsis

The pangenome of hexaploid bread wheat

Montenegro, J.D., Golicz, A.A., Bayer, P.E., Hurgobin, B., Lee, H., Chan, C.-K.K., Visendi, P., Lai, K., Doležel, J., Batley, J., Edwards, D.
PLANT JOURNAL 90 : 1007-1013 , 2017
Klíčová slova: wheat, genome, pangenome, diversity, single nucleotide polymorphisms, database, Triticum aestivum

Dissecting the U, M, S and C genomes of wild relatives of bread wheat (Aegilops spp.) into chromosomes and exploring their synteny with wheat

Molnár, I., Vrána, J., Burešová, V., Cápal, P., Farkas, A., Darkó, É., Cseh, A., Kubaláková, M., Molnár-Láng, M., Doležel, J.
PLANT JOURNAL 88 : 452-467 , 2016
Klíčová slova: Aegilops umbellulata, Aegilops comosa, Aegilops speltoides, Aegilops markgrafii, flow cytometric chromosome sorting, fluorescence in situ hybridization, conserved orthologous set markers

Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H

Aliyeva-Schnorr, L., Beier, S., Karafiátová, M., Schmutzer, T., Scholz, U., Doležel, J., Stein, N., Houben, A.
PLANT JOURNAL 84 : 385–394 , 2015
Klíčová slova: physical map, BAC FISH, centromere, recombination, chromatin, pachytene chromosomes, posttranslational histone modifications