PLANT JOURNAL

Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5Mg of Aegilops geniculata

Tiwari, V.K., Wang, S., Danilova, T., Koo, D.H., Vrána, J., Kubaláková, M., Hřibová, E., Rawat, N., Kalia, B., Singh, N., Friebe, B., Doležel, J., Akhunov, E., Poland, J., Sabir, J.S.M., Gill, B.S.
PLANT JOURNAL 84 : 733-746 , 2015
Keywords: flow sorting, SNPs, next generation sequencing, single gene FISH, GenomeZipper, synteny

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

Muñoz-Amatriaín, M., Lonardi, S., Luo, M.-C., Madishetty, K., Svensson, J.T., Moscou, M.J., Wanamaker, S., Jiang, T., Kleinhofs, A., Muehlbauer, G.J., Wise, R.P., Stein, N., Ma, Y., Rodriguez, E., Kudrna, D., Bhat, P.R., Chao, S., Condamine, P., Heinen, S., Resnik, J., Wing, R., Witt, H.N., Alpert, M., Beccuti, M., Bozdag, S., Cordero, F., Mirebrahim, H., Ounit, R., Wu, Y., You, F., Zheng, J., Šimková, H., Doležel, J., Grimwood, J., Schmutz, J., Duma, D., Altschmied, L., Blake, T., Bregitzer, P., Cooper, L., Dilbirligi, M., Falk, A., Feiz, L., Graner, A., Gustafson, P., Hayes, P.M., Lemaux, P., Mammadov, J., Close, T.J.
PLANT JOURNAL 84 : 216-227 , 2015
Keywords: Barley, Hordeum vulgare L., BAC sequencing, gene distribution, recombination frequency, synteny, centromere BACs, HarvEST:Barley, Aegilops tauschii

Multiple displacement amplification of the DNA from single flow-sorted plant chromosome

Cápal, P., Blavet, N., Vrána, J., Kubaláková, M., Doležel, J.
PLANT JOURNAL 84 : 838-844 , 2015
Keywords: whole-genome amplification, single-chromosome genomics, next-generation sequencing, flow cytometry, chromosome sorting, sequence assembly, Triticum aestivum L. (bread wheat)

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A

Poursarebani, N., Nussbaumer, T., Šimková, H., Šafář, J., Witsenboer, H., van Oeveren, J., Doležel, J., Mayer, K.F.X., Stein, N., Schnurbusch, T.
PLANT JOURNAL 79 : 334-347 , 2014
Keywords: bread wheat chromosome 6A, whole-genome profiling, LINEAR TOPOLOGICAL CONTIGS, anchored physical map, bacterial artificial chromosome contigs, technical advance

Antagonistic roles of abscisic acid and cytokinin during response to nitrogen depletion in oleaginous microalga Nannochloropsis oceanica expand the evolutionary breadth of phytohormone function

Lu Y., Tarkowská D., Turečková V., Luo T., Xin Y, Li J, Wang Q, Jiao N., Strnad M., Xu J.
PLANT JOURNAL 80 : 52-68 , 2014
Keywords: Nannochloropsis oceanica, antagonistic synergy between abscisic acid and cytokinin, phytohormone evolution, stress response, cell cycle progression

Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes

Pont, C., Murat, F., Guizard, S., Flores, R., Foucrier, S., Bidet, Y., Quraishi, U.M., Alaux, M., Doležel, J., Fahima, T., Budak, H., Keller, B., Salvi, S., Maccaferri, M., Steinbach, D., Feuillet, C., Quesneville, H., Salse, J.
PLANT JOURNAL 76 : 1030-1044 , 2013
Keywords: paleogenomics, dominance, partitioning, conserved orthologous set, single nucleotide polymorphism

The exocyst complex contributes to PIN auxin efflux carrier recycling and polar auxin transport in Arabidopsis

Drdová EJ., Synek L., Pečenková T., Hála M., Kulich I., Fowler JE., Murphy AS., Zárský V.
PLANT JOURNAL 73 : 709-719 , 2013
Keywords:

The Arabidopsis concentration-dependent influx/efflux transporter ABCB4 regulates cellular auxin levels in the root epidermis

Kubeš M.*, Yang H.*, Richter G.L.*, Cheng Y., Młodzińska E., Wang X., Blakeslee J.J., Carraro N., Petrášek J., Zažímalová E., Hoyerová K., Peer W.A., Murphy A.S.
PLANT JOURNAL 69 : 640-654 , 2012
Keywords:

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

Hernandez, P., Martis, M., Dorado, G., Pfeifer, M., Gálvez, S., Schaaf, S., Jouve, N., Šimková, H., Valárik, M., Doležel, J., Mayer, K.F.X.
PLANT JOURNAL 69 : 377–386 , 2012
Keywords: wheat genome, chromosome sorting, genome zipper, grass comparative genomics, wheat shotgun chromosome, Triticeae genome

The phosphomimetic mutation of an evolutionarily conserved serine residue affects the signaling properties of Rho of plants (ROPs)

Fodor-Dunai C., Fricke I., Potocký M., Dorjgotov D., Domoki M., Jurca M.E., Otvös K., Žárský V., Berken A., Fehér A.
PLANT JOURNAL 66 : 669-679 , 2011
Keywords: Rho GTPase;plant-specific ROP nucleotide exchanger;ROP guanine nucleotide exchange factor;phosphorylation;ROP interacting receptor-like cytoplasmic kinase;pollen tube growth