BMC GENOMICS

Genomic sequencing of Thinopyrum elongatum chromosome arm 7EL, carrying fusarium head blight resistance, and characterization of its impact on the transcriptome of the introgressed line CS‑7EL

Konkin D., Hsueh Y-Ch., Kirzinger M., Kubaláková M., Haldar A., Balcerzak M., Han F., Fedak G., Doležel J., Sharpe A., Ouellet T.
BMC GENOMICS 23 : 228 , 2022
Keywords: Fusarium graminearum, Disease resistance, Thinopyrum elongatum, Triticum aestivum, Transcriptome, Alien introgression, RNA-seq, Non-coding RNA

Trans-splicing of mRNAs links gene transcription to translational control regulated by mTOR

Danks, G.B., Galbiati, H., Raasholm, M., Cleuren, Y.N.T., Valen, E., Navrátilová, P., Thompson, E.M.
BMC GENOMICS 20 : 908 , 2019
Keywords:

Homologous recombination changes the context of Cytochrome b transcription in the mitochondrial genome of Silene vulgaris KRA

Štorchová H., Stone J.D., Sloan D.B., Abeyawardana O., Müller K., Walterová J., Pažoutová M.
BMC GENOMICS 19 : 874 , 2018
Keywords: Cytoplasmic Male Sterility, Silene vulgaris, mitochondrial genome, homologous recombination

The slowdown of Y chromosome expansion in dioecious Silene latifolia due to DNA loss and male-specific silencing of retrotransposons

Puterova, J., Kubat, Z., Kejnovsky, E., Jesionek, W., Čížková, J., Vyskot, B., Hobza, R.
BMC GENOMICS 19 : 153 , 2018
Keywords: Epigenetics, Genome size, Silene latifolia, Transposable elements, Y chromosome

Features of the organization of bread wheat chromosome 5BS based on physical mapping

Salina, E.A., Nesterov, M.A., Frenkel, Z., Kiseleva, A.A., Timonova, E.M., Magni, F., Vrána, J., Šafář, J., Šimková, H., Doležel, J., Korol, A., Sergeeva, E.M.
BMC GENOMICS 19 : 80 , 2018
Keywords: Chromosome 5BS, Hexaploid wheat, Triticum aestivum, Genetic markers, Physical mapping, Sequencing, Synteny

Sequencing flow-sorted short arm of Haynaldia villosa chromosome 4V provides insights into its molecular structure and virtual gene order

Xiao, J., Dai, K., Fu, L., Vrána, J., Kubaláková, M., Wan, W., Sun, H., Zhao, J., Yu, C., Wu, Y., Abrouk, M., Wang, H., Doležel, J., Wang, X.
BMC GENOMICS 18 : 791 , 2017
Keywords: Haynaldia villosa, Flow sorting, Chromosome arm 4VS, Scaffold, Genome zipper

Identification of miRNAs with potential roles in regulation of anther development and male-sterility in 7B-1 male-sterile tomato mutant.

Omidvar V, Mohorianu I, Dalmay T, Fellner M
BMC GENOMICS 16 : 878- 893 , 2015
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Development of intron targeting (IT) markers specific for chromosome arm 4VS of Haynaldia villosa by chromosome sorting and next-generation sequencing

Wang, H., Dai, K., Xiao, J., Yuan, C., Zhao, R., Doležel, J., Wu, Y., Cao, A., Chen, P., Zhang, S., Wang, X.
BMC GENOMICS 18 : 167 , 2017
Keywords: Triticum aestivum, Haynaldia villosa, Molecular marker, Intron polymorphism

The expansion of heterochromatin blocks in rye reflects the co-amplification of tandem repeats and adjacent transposable elements

Evtushenko, E.V., Levitsky, V.G., Elisafenko, E.A., Gunbin, K.V., Belousov, A.I., Šafář, J., Doležel, J., Vershinin, A.V.
BMC GENOMICS 17 : 337 , 2016
Keywords: Tandem repeats, Transposable elements, Subtelomeric heterochromatin, Rye, Secale cereale, 1RS BAC library, 454 sequences, TE–tandem junctions, DNA motifs

Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods

Martin, G., Baurens, F.-C., Droc, G., Rouard, M., Cenci, A., Kilian, A., Hastie, A., Doležel, J., Aury, J.-M., Alberti, A., Carreel, F., D’Hont, A.
BMC GENOMICS 17 : 243 , 2016
Keywords: Musa acuminata, Genome assembly, Bioinformatics tool, Paired-end sequences, GBS, Genome map