JOURNAL OF EXPERIMENTAL BOTANY

More than meets the eye: knowns and unknowns of the trafficking of small secreted proteins in Arabidopsis.

Pečenková T, Potocký M, Stegmann M.
JOURNAL OF EXPERIMENTAL BOTANY 75 : 3713-3730 , 2024
Keywords:

Hi-C techniques: from genome assemblies to transcription regulation

Šimková, H., Câmara, A.S., Mascher, M.
JOURNAL OF EXPERIMENTAL BOTANY 75 : 5357-5365 , 2024
Keywords: 3D genomics, Capture Hi-C, enhancer–promoter interactions, haplotype-resolved assembly, HiChIP, interactome, Micro-C

Exploring lipid-protein interactions in plant membranes

Škrabálková E., Pejchar P., Potocký M.
JOURNAL OF EXPERIMENTAL BOTANY : in press , 2024
Keywords: genetically encoded biosensors, lipid manipulation, membrane lipid imaging, microscopy, peripheral membrane proteins, protein-lipid interactions

Plant protein-lipid interfaces studied by molecular dynamics simulations

Neubergerová M., Pleskot R.
JOURNAL OF EXPERIMENTAL BOTANY : erae228 , 2024
Keywords: Integral membrane protein; membrane; molecular dynamics simulations; peripheral membrane protein; protein-lipid interactions; structural modelling

Methods for assembling complex mitochondrial genomes in land plants

Štorchova H., Krüger M.
JOURNAL OF EXPERIMENTAL BOTANY in press : , 2024
Keywords: Land plants, mitochondrial genome, recombination, rearrangement, Next Generation Sequencing, hybrid assembly, Unicycler

Non-Rabl chromosome organization in endoreduplicated nuclei of barley embryo and endosperm tissues

Nowicka A., Ferková L., Said M., Kovačik M., Zwyrtková J., Baroux C., Pečinka A.
JOURNAL OF EXPERIMENTAL BOTANY 74 : 2527-2541 , 2023
Keywords: Barley, CENH3, CEREBA repeat, embryo, endoreduplication, endosperm, Hordeum vulgare, nuclear organization, Rabl configuration

Rab-dependent vesicular traffic affects female gametophyte development in Arabidopsis

Rojek J., Tucker M.R., Pinto S.C., Rychłowski M., Lichocka M., Soukupová H., Nowakowska J., Bohdanowicz J., Surmacz G., Gutkowska M.
JOURNAL OF EXPERIMENTAL BOTANY 72 : 320-340 , 2021
Keywords:

The EXO70B2 exocyst subunit contributes to papillae and encasement formation in anti-fungal defence in Arabidopsis.

Ortmannová J, Sekereš J, Kulich I, Šantrůček J, Dobrev P, Žárský V, Pečenková T*
JOURNAL OF EXPERIMENTAL BOTANY 73 : 742-755 , 2022
Keywords:

Diphenylurea-derived cytokinin oxidase/dehydrogenase inhibitors for biotechnology and agriculture

Nisler J., Kopečný D., Pěkná Z., Končitíková R., Koprna R., Murvanidze N., Werbouck S. P. O., Havlíček L., De Diego N., Kopečná M., Wimmer Z., Briozzo P., Moréra S., Zalabák D., Spíchal L., Strnad M.
JOURNAL OF EXPERIMENTAL BOTANY 72 : 355-370 , 2021
Keywords: Agriculture, biotechnology, CKX inhibitor, crystal structure, cytokinin, cytokinin oxidase/dehydrogenase, diphenylurea, plant tissue culture, stress, yield

The EXO70B2 exocyst subunit contributes to papillae and encasement formation in anti-fungal defence in Arabidopsis

Ortmannová J, Sekereš J, Kulich I, Šantrůček J, Dobrev P, Žárský V, Pečenková T.
JOURNAL OF EXPERIMENTAL BOTANY : , 2021
Keywords: SNARE, callose, exocyst, nonhost resistance, penetration, secretion